A. Darwish, M. Elgenedy, S. Finney et al.

IEEE Transactions on Industrial Electronics • 2019

Irreversible electroporation (IRE) for disinfection applications involve exposing the specimen cell membrane to a pulsed electric field in order to kill harmful microorganisms. High-voltage (HV) pulses, of relatively short durations in range of few microseconds, are generated across the sample chamber. The HV pulse specifications such as voltage magnitude, waveform, repetition rate, and duration differ according to the conditions of the sample being processed. This paper proposes a new step-up power electronic converter topology for generating the required HV pulses from a relatively low input voltage. The converter consists of two main stages; the first stage is responsible for boosting the input voltage to the desired level using input-parallel/output-series connected dc/dc modules, while the second stage forms the required HV pulses with the proper magnitude, duration, and repetition rate using modular multilevel converter submodules. The proposed topology is able to produce the HV pulses with controlled voltage and current stresses across the employed semiconductor switches and diodes; hence, it can be implemented with the market-available semiconductor technology. Mathematical analysis of the proposed topology is developed, and MATLAB/Simulink simulation results explore operational conditions. Experimental results from a scaled-down prototype validate the functionality of the proposed system.

M. Rahimnejad, Gholamreza Bakeri, G. Najafpour et al.

Biofuel Research Journal • 2014

Microorganisms in microbial fuel cells (MFC) liberate electrons while the electron donors are consumed. In the anaerobic anode compartment, substrates such as carbohydrates are utilized and as a result bioelectricity is produced in the MFC. MFCs may be utilized as electricity generators in small devices such as biosensors. MFCs still face practical barriers such as low generated power and current density. Recently, a great deal of attention has been given to MFCs due to their ability to operate at mild conditions and using different biodegradable substrates as fuel. The MFC consists of anode and cathode compartments. Active microorganisms are actively catabolized to carbon sources, therefore generating bioelectricity. The produced electron is transmitted to the anode surface but the generated protons must pass through the proton exchange membrane (PEM) in order to reach the cathode compartment. PEM as a key factor affecting electricity generation in MFCs has been investigated here and its importance fully discussed.

A. Hitchcock, C. N. Hunter, D. Canniffe

Microbial Biotechnology • 2019

Cyanobacteria are prokaryotic phototrophs that, in addition to being excellent model organisms for studying photosynthesis, have tremendous potential for light‐driven synthetic biology and biotechnology. These versatile and resilient microorganisms harness the energy of sunlight to oxidise water, generating chemical energy (ATP) and reductant (NADPH) that can be used to drive sustainable synthesis of high‐value natural products in genetically modified strains. In this commentary article for the Synthetic Microbiology Caucus we discuss the great progress that has been made in engineering cyanobacterial hosts as microbial cell factories for solar‐powered biosynthesis. We focus on some of the main areas where the synthetic biology and metabolic engineering tools in cyanobacteria are not as advanced as those in more widely used heterotrophic chassis, and go on to highlight key improvements that we feel are required to unlock the full power of cyanobacteria for future green biotechnology.

D. Park, So-Hee An, Yeawan Lee et al.

Toxics • 2022

Particulate matter, including airborne pathogens, is of particular concern because it can cause the spread of diseases through aerosol transmission. In this study, a new concept is proposed: on-demand antiviral electrostatic precipitators (ESPs) with electrothermal-based antiviral surfaces. We applied electrothermal-based antiviral surfaces to air-purifying applications and demonstrated that the proposed method is effective with regard to collecting airborne virus particles on collection plates in a two-stage ESP. With alternating current power, MS2 bacteriophage and H1N1 viruses were completely deactivated after exposure to 50 °C for 30 min. This remarkable antiviral performance via electrothermal effects indicates that on-demand platforms for self-antiviral surfaces can perform sterilization immediately without generating secondary pollutants, thus effectively preventing the spread of infectious microorganisms in public places. We believe that the results of this study can provide useful guidelines for the design and realization of practical and wearable devices for antiviral air-purifying applications.

Cristiane Ferreira Alfenas, Mariane Floriano, L. Santos et al.

• 2011

Searching for a therapy capable of acting on bacteria resistance to the conventional endodontic treatment, a the Photodynamic Therapy (PDT) has been shown to be very efficient. the It consists in an association of a photosensitizer plus a specific light source, such as low power laser, generating very shor t and reactive chemical species that, in high concentrations, are toxic, promoting the killing of the bacteria, fungi and viruses. Several authors show the benefits of the Photodynamic Therapy in the decontamination of the root canal. The aim of this work is to make a literary review of protocols used in photodynamic therapy for reduction of microorganisms within root canal system.

Hyun Min Lee, Hong Rae Kim, Eunbeen Jeon et al.

Microorganisms • 2020

Plastic waste worldwide is becoming a serious pollution problem for the planet. Various physical and chemical methods have been tested in attempts to remove plastic dumps. However, these have usually resulted in secondary pollution issues. Recently, the biodegradation of plastic by fungal and bacterial strains has been spotlighted as a promising solution to remove plastic wastes without generating secondary pollution. We have previously reported that a Pseudomonas aeruginosa strain isolated from the gut of a superworm is capable of biodegrading polystyrene (PS) and polyphenylene sulfide (PPS). Herein, we demonstrate the extraordinary biodegradative power of P. aeruginosa in efficiently depolymerizing four different types of plastics: PS, PPS, polyethylene (PE) and polypropylene (PP). We further compared biodegradation rates for these four plastic types and found that PE was biodegraded fastest, whereas the biodegradation of PP was the slowest. Moreover, the growth rates of P. aeruginosa were not always proportional to biodegradation rates, suggesting that the rate of bacterial growth could be influenced by the composition and properties of intermediate molecules produced during plastic biodegradation, and these may supply useful cellular precursors and energy. In conclusion, an initial screening system to select the most suitable bacterial strain to biodegrade certain types of plastic is particularly important and may be necessary to solve plastic waste problems both presently and in the future.

A. Nawaz, A. Hafeez, Syed Zaghum Abbas et al.

Green Chemistry Letters and Reviews • 2020

ABSTRACT The increase in the industrial revolution, urbanization, and deficit in crude oil resources urged scientists to look for sustainable and renewable energy resources. Microbial fuel cells (MFCs) are bio-electrochemical devices that convert the chemical energy of bio mass into electrical energy utilizing microorganisms as biocatalysts. MFC is an enthralling technology, and it has many important applications. There are different designs of MFC currently in use, each having their pros and cons; however, the stacked MFC is so far generating the highest power output. Different factors, discussed in this review, contribute toward the efficiency of the process. An ample amount of research has been done to convert the theoretical framework of MFC into a practical application; however, the later still remains a big challenge. A plethora of technical problems is in the way for MFC to be driven toward up-scaling and real-world applications. This review discusses electron transfer mechanisms in MFCs and important factors affecting the performance of MFC. Reactor design is a main limiting factor in MFC technology, and this review also focuses on recent improvements in reactor designs and modifications. Moreover, some main applications of MFC technology, limitations, recent advancements, and future prospects are discussed. GRAPHICAL ABSTRACT

M. De La Cruz –Noriega, S. Rojas-Flores, R. Nazario-Naveda et al.

Environmental Research, Engineering and Management • 2022

Potential use of organic waste and microalgae generates bioelectricity and thereby reduces harmful effects on the environment. These residues are used due to their high content of electron-generating microorganisms. However, so far, they have not been used simultaneously. Therefore, this research uses mango waste and microalgae Spirulina sp. in double-chamber microbial fuel cells to generate bioelectricity. The cells were made at a laboratory scale using zinc and copper electrodes, achieving a maximum current and voltage of 7.5948 ± 0.3109 mA and 0.84546 ± 0.314 V, with maximum electrical conductivity of the substrate being 157.712 ± 4.56 mS/cm and an optimum operating pH being 5.016 ± 0.086. The cells showed a low internal resistance of approximately 205.056 ± 25 Ω, and a maximum power density of 657.958 ± 21.114 mW/cm2 at a current density of 4.484 A/cm2. This research provides an excellent opportunity for mango farmers and exporting and importing companies because they can use their own waste to reduce their electricity costs when this prototype is brought to a large scale.

M. L. K. Khider, T. Brautaset, Marta Irla

World Journal of Microbiology and Biotechnology • 2021

Worldwide, the use of methane is limited to generating power, electricity, heating, and for production of chemicals. We believe this valuable gas can be employed more widely. Here we review the possibility of using methane as a feedstock for biotechnological processes based on the application of synthetic methanotrophs. Methane monooxygenase (MMO) enables aerobic methanotrophs to utilize methane as a sole carbon and energy source, in contrast to industrial microorganisms that grow on carbon sources, such as sugar cane, which directly compete with the food market. However, naturally occurring methanotrophs have proven to be difficult to manipulate genetically and their current industrial use is limited to generating animal feed biomass. Shifting the focus from genetic engineering of methanotrophs, towards introducing metabolic pathways for methane utilization in familiar industrial microorganisms, may lead to construction of efficient and economically feasible microbial cell factories. The applications of a technology for MMO production are not limited to methane-based industrial synthesis of fuels and value-added products, but are also of interest in bioremediation where mitigating anthropogenic pollution is an increasingly relevant issue. Published research on successful functional expression of MMO does not exist, but several attempts provide promising future perspectives and a few recent patents indicate that there is an ongoing research in this field. Combining the knowledge on genetics and metabolism of methanotrophy with tools for functional heterologous expression of MMO-encoding genes in non-methanotrophic bacterial species, is a key step for construction of synthetic methanotrophs that holds a great biotechnological potential.

An Li, Yanan Chu, Xumin Wang et al.

Biotechnology for Biofuels • 2013

BackgroundA solid-state anaerobic digestion method is used to produce biogas from various solid wastes in China but the efficiency of methane production requires constant improvement. The diversity and abundance of relevant microorganisms play important roles in methanogenesis of biomass. The next-generation high-throughput pyrosequencing platform (Roche/454 GS FLX Titanium) provides a powerful tool for the discovery of novel microbes within the biogas-generating microbial communities.ResultsTo improve the power of our metagenomic analysis, we first evaluated five different protocols for extracting total DNA from biogas-producing mesophilic solid-state fermentation materials and then chose two high-quality protocols for a full-scale analysis. The characterization of both sequencing reads and assembled contigs revealed that the most prevalent microbes of the fermentation materials are derived from Clostridiales (Firmicutes), which contribute to degrading both protein and cellulose. Other important bacterial species for decomposing fat and carbohydrate are Bacilli, Gammaproteobacteria, and Bacteroidetes (belonging to Firmicutes, Proteobacteria, and Bacteroidetes, respectively). The dominant bacterial species are from six genera: Clostridium, Aminobacterium, Psychrobacter, Anaerococcus, Syntrophomonas, and Bacteroides. Among them, abundant Psychrobacter species, which produce low temperature-adaptive lipases, and Anaerococcus species, which have weak fermentation capabilities, were identified for the first time in biogas fermentation. Archaea, represented by genera Methanosarcina, Methanosaeta and Methanoculleus of Euryarchaeota, constitute only a small fraction of the entire microbial community. The most abundant archaeal species include Methanosarcina barkeri fusaro, Methanoculleus marisnigri JR1, and Methanosaeta theromphila, and all are involved in both acetotrophic and hydrogenotrophic methanogenesis.ConclusionsThe identification of new bacterial genera and species involved in biogas production provides insights into novel designs of solid-state fermentation under mesophilic or low-temperature conditions.

Shangjie Ge-Zhang, Taoyang Cai, Mingbo Song

Frontiers in Plant Science • 2023

As the most suitable potential clean energy power generation technology, biophotovoltaics (BPV) not only inherits the advantages of traditional photovoltaics, such as safety, reliability and no noise, but also solves the disadvantages of high pollution and high energy consumption in the manufacturing process, providing new functions of self-repair and natural degradation. The basic idea of BPV is to collect light energy and generate electric energy by using photosynthetic autotrophs or their parts, and the core is how these biological materials can quickly and low-loss transfer electrons to the anode through mediators after absorbing light energy and generating electrons. In this mini-review, we summarized the biological materials widely used in BPV at present, mainly cyanobacteria, green algae, biological combinations (using multiple microorganisms in the same BPV system) and isolated products (purified thylakoids, chloroplasts, photosystem I, photosystem II), introduced how researchers overcome the shortcomings of low photocurrent output of BPV, pointed out the limitations that affected the development of BPV’ biological materials, and put forward reasonable assumptions accordingly.

Raúl Ortega Pérez, José Carlos Nieto García, Victor M. Gallegos-Cedillo et al.

Agronomy • 2023

The use of microorganisms capable of promoting the growth and development of crops is generating interest at a global level as a sustainable technique in modern agriculture, especially in intensive farming systems, where the excessive use of synthetic fertilizers has led to environmental problems. The objective of this research was to evaluate the biofertilizing power of formulations enriched with plant growth-promoting bacteria (PGPB) (Azotobacter spp. to fix N and strains of Bacillus spp. to solubilize P and K not bioavailable for plants) to improve the fertility, quality, and productivity of a tomato crop and their potential use as an alternative to conventional fertilizers. Thus, NPK levels in soils, leaves, and fruits were evaluated; various parameters of fruit quality were measured; and an exhaustive analysis of the production and economic yields of the harvest was carried out. The results showed that the periodic supply of biofertilizers based on PGPB increased the harvest yield (20–32%) and favored the development of larger fruit sizes, which are economically more valuable, and the incomes increased even more than production (32–52%). The biofertilizers also demonstrated a positive effect on the solubilization of P and K in the soil, and the levels of P in leaves were also promoted. The capacity to mobilize the nutrients from soil to fruits was clearly favored when PGPB were inoculated periodically, and a reduction of up to 20% in synthetic fertilizers was accomplished (16, 34, and 23% increases for N, P, and K, respectively, against the treatment without PGPB and no fertigation reduction). Finally, the use of PGPB did not show appreciable differences regarding fruit quality parameters.

Adriana Páez, Andrea Lache-Muñoz, S. Medina et al.

Tecnología y ciencias del agua • 2019

Microbial fuel cells (MFC) are an alternative for electric power production based on the oxidation of organic matter, for that reason waste waters are been considered as source of organic matter which can be transformed by microorganisms with the capacity of generating electric power. Therefore, the use of this technology, allows fulfilling two objectives, electricity production and pollutant reduction. In this work, a two-chamber MFC was assembled and operated in discontinuous mode to evaluate the parameters of electricity production and COD reduction in a synthetic waste water (with an invariant nutritional composition), using Escherichia coli and Pseudomonas aeruginosa strains. Carbon cloth and graphite were employed as electrodes, and methylene blue as a mediator. The initial pH values of the synthetic wastewater used as a substrate were variated in the tests. According to the operating conditions described above, a maximum average value of 464 mV was obtained for the voltage in open circuit and a potential density of 3.98 mW/m 2 , using Escherichia coli with a pH value of 6.5, a mediator, and with graphite as the material for electrodes. Additionally, a significant decrease in chemical oxygen demand (COD) was achieved with 11.53% for E. coli being the highest one. Lastly, microbial quantification was done, obtaining a lower growth time also for Escherichia coli .

H. Nganguia, D. Palaniappan

Journal of Fluid Mechanics • 2024

Abstract The classical paper by Lighthill (Commun. Pure Appl. Maths, vol. 109, 1952, p. 118) on the propulsion of ciliated microorganisms has become the reference against which many modern studies on swimming in low Reynolds number are compared. However, Lighthill's study was limited to propulsion in a uniform flow, whereas several biologically relevant microorganisms experience non-uniform flows. Here we propose a benchmark for ciliary propulsion in paraboloidal flows. We first consider the axisymmetric problem, with the microorganisms on the centreline of the background flow, and derive exact analytical solutions for the flow field. Our results reveal flow features, swimming characteristics and performance metrics markedly different from those generated in a uniform flow. In particular, the background paraboloidal flow introduces a Stokes quadrupole singularity at the leading-order flow field, generating vortices. Moreover, we determine the necessary conditions on the strength of the background flow for optimal power dissipation and swimming efficiency. We then consider the more general case of a microorganism off the centreline of the background flow. In this case, the squirmer experiences a paraboloidal, linear shear and uniform flows due to its position relative to the flow's centreline. Our findings show that while the linear shear flow does not affect the translational and rotational velocities of the squirmer, it does influence the velocity field and, therefore, the power dissipation.

Nurfarhana Nabila Mohd Noor, Ilwon Jeong, Seokjin Yoon et al.

Microorganisms • 2024

This study examined the utilization of spent coffee grounds with different aqueous extraction methods for the bioelectricity generation from coastal benthic sediment through a sediment microbial fuel cell (SMFC) system. Different methods for the aqueous extraction of SCGs were evaluated, including rinsing and drying of the SCG (SMFC-CRD), immersion, rinsing and drying (SMFC-CRID), drying alone (SMFC-CD), and untreated SCG (SMFC-C). The caffeine concentration in the SCG was significantly reduced using pretreatments, with SMFC-CRID achieving the lowest concentration of 0.021 ± 0.001 mg/g. SMFC-CRD contributed to the generation of the highest current density of 213.7 mA/m2 during closed-circuit operation and exhibited the highest power density of 96.9 mW/m2 in the polarization test, due to the suitable caffeine content of 0.275 ± 0.001 mg/g in the SCG. This study could provide a cost-effective method for reusing SCGs (i.e., 128 g) while generating bioelectricity as an alternative energy source. These results suggest that pretreatment with SCGs is essential for achieving optimal power density and reducing the caffeine concentration in the SMFC system.

Samantha J. Gleich, Jacob A. Cram, J. Weissman et al.

ISME Communications • 2021

Ecological network analyses are used to identify potential biotic interactions between microorganisms from species abundance data. These analyses are often carried out using time-series data; however, time-series networks have unique statistical challenges. Time-dependent species abundance data can lead to species co-occurrence patterns that are not a result of direct, biotic associations and may therefore result in inaccurate network predictions. Here, we describe a generalize additive model (GAM)-based data transformation that removes time-series signals from species abundance data prior to running network analyses. Validation of the transformation was carried out by generating mock, time-series datasets, with an underlying covariance structure, running network analyses on these datasets with and without our GAM transformation, and comparing the network outputs to the known covariance structure of the simulated data. The results revealed that seasonal abundance patterns substantially decreased the accuracy of the inferred networks. In addition, the GAM transformation increased the predictive power (F1 score) of inferred ecological networks on average and improved the ability of network inference methods to capture important features of network structure. This study underscores the importance of considering temporal features when carrying out network analyses and describes a simple, effective tool that can be used to improve results.

Xiaomeng Liu, T. Ueki, Hongyan Gao et al.

• 2021

Sustainable strategies for energy production are required to reduce reliance on fossil fuels and to power electronics without generating toxic waste.1-7 Generating electricity from water evaporation through engineered materials is a promising approach,8,9 but power outputs have been low and the materials employed were not sustainably produced. Microorganisms can be mass produced with renewable feedstocks. Here, we demonstrate that it is possible to engineer microbial biofilms as a cohesive, flexible material for long-term continuous electricity production from evaporating water. The biofilm sheets were the functional component in devices that continuously produced power densities (∼1 μW/cm2) higher than that achieved with non-biological materials. Current production scaled directly with biofilm-sheet size and skin-patch devices harvested sufficient electricity from the moisture on skin to continuously power wearable devices. The results demonstrate that appropriately engineered biofilms can perform as robust functional materials without the need for further processing or maintaining cell viability. Biofilm-based hydroelectric current production was comparable to that achieved with similar sized biofilms catalyzing current production in microbial fuel cells,10,11 without the need for an organic feedstock or maintaining cell viability. The ubiquity of biofilms in nature suggests the possibility of additional sources of biomaterial for evaporation-based electricity generation and the possibility of harvesting electricity from diverse aqueous environments.

S. Sharma, Archana Sharma

Transactions of the Indian National Academy of Engineering • 2020

Dielectric barrier discharge (DBD) is a promising method of producing non-thermal plasma, which is widely used in variety of industrial and biological applications including disinfection/sterilization. Plasma sterilization offers a faster, less toxic and versatile alternative to conventional sterilization techniques. 45 kV, 50 kHz high voltage high-frequency power supply was designed for generating DBD plasma. Experimental studies were conducted using DBD plasma on growth control in algae, breakdown of complex phenols for chemical wastewater treatment and generation of UV, ozone and other reactive species using DBD plasma discharges in ambient air. A portable DBD plasma-based sterilization system is developed for fighting the Covid-19 pandemic. Quartz tube is used as a dielectric medium between copper foil—SS electrodes and 17 kV, 30 kHz pulse is applied across it, which produces intense DBD across SS mesh. This system can sterilize and disinfect the microorganism contaminated surfaces, garments and used disposable protective gears with UV, ozone and short-lived molecules of metastable states and excited chemical species of nitrogen and oxygen produced during the DBD plasma discharges in ambient air.

Han Chen, Yuanming Li, Zanyun Ying et al.

RSC Advances • 2023

Microbial fuel cells (MFCs) are widely acknowledged to be a promising eco-friendly abatement technology of pollutants, and are capable of generating electricity. However, the poor mass transfer and reaction rate in MFCs significantly decrease their treatment capacity for contaminants, especially hydrophobic substances. The present work developed a novel MFC integrated with an airlift (ALR) reactor using a polypyrrole modified anode to promote the bioaccessibility of gaseous o-xylene and attachment of microorganisms. The results indicated that the established ALR-MFC system showed excellent elimination capability, with removal efficiency exceeding 84% even at high o-xylene concentration (1600 mg m−3). The maximum output voltage of 0.549 V and power density of 13.16 mW m−2 obtained by the Monod-type model were approximately twice and sixfold higher than that of a conventional MFC, respectively. According to the microbial community analysis, the superior performances of the ALR-MFC in terms of o-xylene removal and power generation were mainly ascribed to the enrichment of degrader (i.e. Shinella) and electrochemical active bacteria (i.e. Proteiniphilum). Moreover, the electricity generation of the ALR-MFC did not decrease at a high O2 concentration, as O2 was conducive to o-xylene degradation and electron release. The supplication of an external carbon source such as sodium acetate (NaAc) was conducive to increasing output voltage and coulombic efficiency. The electrochemical analysis revealed that released electrons can be transmitted with the action of NADH dehydrogenase to OmcZ, OmcS, and OmcA outer membrane proteins via a direct or indirect pathway, and ended up transferring to the anode directly.

Á. E. Martínez de Alba, M. B. Rubio, M. E. Morán-Diez et al.

Microorganisms • 2021

This study examined the microbicidal activity of ultraviolet (UV)-C185–256-nm irradiance (robot 1) and ozone generated at UV-C185-nm by low-pressure mercury vapor lamps (robot 2) adapted to mobile robotic devices for surface decontamination, which was achieved in less than 1 h. Depending on their wall structure and outer envelopes, many microorganisms display different levels of resistance to decontaminating agents. Thus, the need for novel disinfection approaches is further exacerbated by the increased prevalence of multidrug-resistant bacteria, as well as the potential of novel microorganisms, with the ability to cause disease outbreaks. To set up a rapid and effective approach for microorganisms propagation prevention, we focused on the effects of UV-C and ozone on a distinct microorganism survival ratio. A set of microorganisms, including Escherichia coli, Micrococcus luteus, Saccharomyces cerevisiae, Trichoderma harzianum, and Bacillus subtilis, were used to evaluate the disinfection power of UV-C and UV-C plus ozone generating robots. UV-C disinfection can be suited to ad hoc tasks, is easy to operate, requires low maintenance, does not have the need for the storage of dangerous chemicals, and does not produce by-products that may affect human health and the environment. The robotic cumulative irradiation technology developed (fluence accumulated values of 2.28 and 3.62 mJ cm−2, for robot 1 and 2, respectively), together with the production of ozone (with a maximum peak of 0.43 ppm) capable of reaching UV-C shaded surfaces, and analyzed in the current study, despite being designed for the need to reduce the risk of epidemic outbreaks in real-life scenarios, represents a versatile tool that could be employed for air and surface disinfection within many circumstances that are faced daily.

Julia Maria Kurth, Marie-Caroline Müller, Cornelia Ulrike Welte et al.

Microorganisms • 0

<jats:p>Methanogenic archaea operate an ancient, if not primordial, metabolic pathway that releases methane as an end-product. This last step is orchestrated by the methyl-coenzyme M reductase (MCR), which uses a nickel-containing F430-cofactor as the catalyst. MCR astounds the scientific world by its unique reaction chemistry, its numerous post-translational modifications, and its importance in biotechnology not only for production but also for capturing the greenhouse gas methane. In this report, we investigated MCR natively isolated from Methermicoccus shengliensis. This methanogen was isolated from a high-temperature oil reservoir and has recently been shown to convert lignin and coal derivatives into methane through a process called methoxydotrophic methanogenesis. A methoxydotrophic culture was obtained by growing M. shengliensis with 3,4,5-trimethoxybenzoate as the main carbon and energy source. Under these conditions, MCR represents more than 12% of the total protein content. The native MCR structure refined at a resolution of 1.6-Å precisely depicts the organization of a dimer of heterotrimers. Despite subtle surface remodeling and complete conservation of its active site with other homologues, MCR from the thermophile M. shengliensis contains the most limited number of post-translational modifications reported so far, questioning their physiological relevance in other relatives.</jats:p>

Regina S. Redman, Yong Ok Kim, Sang Cho et al.

Microorganisms • 0

<jats:p>Studies were undertaken to determine if fungal endophytes from plants in stressful habitats could be commercialized to generate climate resilient crop plants. Fungal endophytes were isolated from weedy rice plants and grasses from South Korea and the USA, respectively. Endophytes (Curvularia brachyspora and Fusarium asiaticum) from weedy rice plants from high salt or drought stressed habitats in South Korea conferred salt and drought stress tolerance to weedy rice and commercial varieties reflective of the habitats from which they were isolated. Fungal endophytes isolated from grasses in arid habitats of the USA were identified as Trichoderma harzianum and conferred drought and heat stress tolerance to monocots and eudicots. Two T. harzianum isolates were exposed to UV mutagenesis to derive strains resistant to fungicides in seed treatment plant protection packages. Three strains that collectively had resistance to commonly used fungicides were used for field testing. The three-strain mixture (ThSM3a) increased crop yields proportionally to the level of stress plants experienced with average yields up to 52% under high and 3–5% in low stress conditions. This study demonstrates fungal endophytes can be developed as viable commercial tools for rapidly generating climate resilient crops to enhance agricultural sustainability.</jats:p>

Stina Hedžet, Maja Rupnik, Tomaž Accetto

Microorganisms • 0

<jats:p>Intestinal phages are abundant and important components of gut microbiota, yet the isolated and characterized representatives that infect abundant gut bacteria are sparse. Here we describe the isolation of human intestinal phages infecting Bacteroidesuniformis. Bacteroides is one of the most common bacterial groups in the global human gut microbiota; however, to date not many Bacteroides specific phages are known. Phages isolated in this study belong to a novel viral genus, Bacuni, within the Siphoviridae family. Their genomes encode diversity-generating retroelements (DGR), which were shown in other bacteriophages to promote phage adaptation to rapidly changing environmental conditions and to broaden their host range. Three isolated phages showed 99.83% genome identity but one of them infected a distinct B. uniformis strain. The tropism of Bacuni phages appeared to be dependent on the interplay of DGR mediated sequence variations of gene encoding putative phage fimbrial tip proteins and mutations in host genes coding for outer-membrane proteins. We found prophages with up to 85% amino acid similarity over two-thirds of the Bacuni phage genome in the B. acidifaciens and Prevotella sp. genomes. Despite the abundance of Bacteroides within the human microbiome, we found Bacuni phages only in a limited subset of published gut metagenomes.</jats:p>

H. Keykha, A. Asadi

Advances in Civil Engineering Materials • 2017

This technical note aims to show the utility of solar energy coupled by electrobiogrouting as an environmentally friendly source of energy and prevent disposal of Ammonium in soil for the successful application of bacteria for soil improvement. A small-scale column electrokinetic cell was set up to inject carbonate-producing bacteria into the soil. Also, a solar power supply was utilized to generate a dc voltage of around 35 V for different treatment times. The results showed that the application of the concentrated solar-powered electro-microbiologically induced calcium carbonate precipitation (CSP-E-MICP) method to the soil increased the unconfined compressive strength of the soil at different curing time. The results of this experiment revealed that the unconfined shear strength of the soil increased due to the calcium carbonate (CaCO3) precipitation between the soil particles. In this method, the ammonium (NH4+) was retained in the cathode chamber by the graphite cathode electrode, and the pollution prevention system minimized the leakage of NH4+ ions into the soil.

H. T. Dinh, Hiromi Kambara, Yoshiki Harada et al.

Microbes and Environments • 2021

The present study investigated bioelectrical methane production from CO2 without organic substances. Even though microbial methane production has been reported at relatively high electric voltages, the amount of voltage required and the organisms contributing to the process currently remain unknown. Methane production using a biocathode was investigated in a microbial electrolysis cell coupled with an NH4+ oxidative reaction at an anode coated with platinum powder under a wide range of applied voltages and anaerobic conditions. A microbial community analysis revealed that methane production simultaneously occurred with biological denitrification at the biocathode. During denitrification, NO3– was produced by chemical NH4+ oxidation at the anode and was provided to the biocathode chamber. H2 was produced at the biocathode by the hydrogen-producing bacteria Petrimonas through the acceptance of electrons and protons. The H2 produced was biologically consumed by hydrogenotrophic methanogens of Methanobacterium and Methanobrevibacter with CO2 uptake and by hydrogenotrophic denitrifiers of Azonexus. This microbial community suggests that methane is indirectly produced without the use of electrons by methanogens. Furthermore, bioelectrical methane production occurred under experimental conditions even at a very low voltage of 0.05 V coupled with NH4+ oxidation, which was thermodynamically feasible.

R. Peña-Eguiluz, J. A. Pérez-Martínez, J. Solís-Pacheco et al.

The European Physical Journal Applied Physics • 2010

Microplasmas are nowadays a powerful tool with multiple practical applications. The performance of a specific instrumentation for a plasma needle capable of producing non-thermal plasmas and a DBD reactor able to produce atmospheric pressure plasmas, both of them designed and already constructed, is reported. These devices operate at 13.56 MHz and are driven by a specifically built radio frequency (RF) resonant converter. The reactors, which operate at atmospheric pressure in a He-air gas mixture at a 1.5 SLPM flow, have been successfully applied to eliminate E. coli bacteria. In the needle case, bacterial samples were submitted typically to a 500 V peak voltage plasma discharge for 120 s. In the DBD treatment, the samples were processed with typical 750 V peak voltage plasma discharges for 80 s. The sample pH was used as a criterion to measure the effectiveness of the plasma treatment, in such a way that the return to the basal pH value after the treatment can be assumed as the validation of the complete bacterial elimination.

S. Gowshmeed, R. Vithiya, E. Ramassamy

2023 International Conference on System, Computation, Automation and Networking (ICSCAN) • 2023

Pulsed electric fields (PEF), a non-thermal food preservation technique, employs short electrical pulses that disable bacteria while having a negligible impact on the properties of the food. PEF technology aims to deliver nutritious meals to customers. PEF technology is regarded to be superior to traditional thermal processing methods for food quality attributes because it prevents or significantly reduces negative variations to the sensory and physical features of food. Foods that are placed between two electrodes using PEF technology are treated using high voltage pulses. Most PEF research has been centred on how PEF treatments affect the microbial inactivation of milk, dairy goods, egg-related goods, juice along with and other liquid meals. Successful applications of the PEF treatment include the inactivation of microorganisms, enhancement of pressurising productivity, and extraction of juice from food-producing plants, as well as intensifying food dehydrating and drying. The creation of a kind of solid, semisolid, and liquid food preservation system based on PEF. The creation of the chamber and the accomplishment of its tomato ketchup test A 20 kHz frequency was used to test the system.

G. Bucciarelli, Maren Lechner, Audrey Fontes et al.

Toxins • 2021

Tetrodotoxin (TTX) is a potent neurotoxin that was first identified in pufferfish but has since been isolated from an array of taxa that host TTX-producing bacteria. However, determining its origin, ecosystem roles, and biomedical applications has challenged researchers for decades. Recognized as a poison and for its lethal effects on humans when ingested, TTX is primarily a powerful sodium channel inhibitor that targets voltage-gated sodium channels, including six of the nine mammalian isoforms. Although lethal doses for humans range from 1.5–2.0 mg TTX (blood level 9 ng/mL), when it is administered at levels far below LD50, TTX exhibits therapeutic properties, especially to treat cancer-related pain, neuropathic pain, and visceral pain. Furthermore, TTX can potentially treat a variety of medical ailments, including heroin and cocaine withdrawal symptoms, spinal cord injuries, brain trauma, and some kinds of tumors. Here, we (i) describe the perplexing evolution and ecology of tetrodotoxin, (ii) review its mechanisms and modes of action, and (iii) offer an overview of the numerous ways it may be applied as a therapeutic. There is much to be explored in these three areas, and we offer ideas for future research that combine evolutionary biology with therapeutics. The TTX system holds great promise as a therapeutic and understanding the origin and chemical ecology of TTX as a poison will only improve its general benefit to humanity.

Joseph Kletzer, Y. Raval, A. Mohamed et al.

Journal of Applied Microbiology • 2023

AIMS As antimicrobial resistance is on the rise, treating chronic wound infections is becoming more complex. The presence of biofilms in wound beds contributes to this challenge. Here, the activity of a novel hypochlorous acid (HOCl) producing electrochemical bandage (e-bandage) against monospecies and dual-species bacterial biofilms formed by bacteria commonly found in wound infections was assessed. METHODS AND RESULTS The system was controlled by a wearable potentiostat powered by a 3V lithium-ion battery and maintaining a constant voltage of +1.5VAg/AgCl, allowing continuous generation of HOCl. 19 monospecies and 10 dual-species bacterial biofilms grown on polycarbonate membranes placed on tryptic soy agar (TSA) plates were used as wound biofilm models, with HOCl producing e-bandages placed over the biofilms. Viable cell counts were quantified after e-bandages were continuously polarized for 2, 4, 6, and 12 hours. Time-dependent reductions in colony forming units (CFUs) were observed for all studied isolates. After 12 hours, average CFU reductions of 7.75 ±1.37 log10 CFU/cm2 and 7.74 ±0.60 log10 CFU/cm2 were observed for monospecies and dual-species biofilms, respectively. CONCLUSIONS HOCl producing e-bandages reduce viable cell counts of in vitro monospecies and dual-species bacterial biofilms in a time-dependent manner in vitro. After 12 hours, >99.999% reduction in cell viability was observed for both monospecies and dual-species biofilms.

Zhong Zeyu, Haiying Guo, Chunfeng Huang et al.

Water Science and Technology • 2023

The single-chamber bio-electrical systems can degrade oily sludge in sediments while generating electricity from the microbial fuel cells (MFCs) and their characteristics in energy and environmental effects have attracted wide international attention in recent years. To explore the influence of the power generation period on the oily sludge bio-electrical system, an oily sludge bio-electrical system was constructed. The output voltage, polarization curve, power density curve, crude oil removal rate and microflora were detected during different power generation periods, respectively. The results of this study showed that under the stable power generation period, the power generation and oily sludge degradation performance of MFC are higher than the voltage rise period and voltage attenuation period. Besides, the oily sludge bio-electrical system during the stable period contained more electricity-producing bacteria than the other two periods. The voltage in the stable period of oily sludge bio-electrical system is about 280 mV, the electromotive force is 493.1 mV and the power density is 134.93 mW·m-3. It lays a foundation for the improvement of degradation of crude oil and power generation performance in oily sludge bio-electrical system.

Ilya Getsin, Gina H Nalbandian, D. Yee et al.

BMC Microbiology • 2013

Two of the largest fully sequenced prokaryotic genomes are those of the actinobacterium, Streptomyces coelicolor (Sco), and the δ-proteobacterium, Myxococcus xanthus (Mxa), both differentiating, sporulating, antibiotic producing, soil microbes. Although the genomes of Sco and Mxa are the same size (~9 Mbp), Sco has 10% more genes that are on average 10% smaller than those in Mxa. Surprisingly, Sco has 93% more identifiable transport proteins than Mxa. This is because Sco has amplified several specific types of its transport protein genes, while Mxa has done so to a much lesser extent. Amplification is substrate- and family-specific. For example, Sco but not Mxa has amplified its voltage-gated ion channels but not its aquaporins and mechano-sensitive channels. Sco but not Mxa has also amplified drug efflux pumps of the DHA2 Family of the Major Facilitator Superfamily (MFS) (49 versus 6), amino acid transporters of the APC Family (17 versus 2), ABC-type sugar transport proteins (85 versus 6), and organic anion transporters of several families. Sco has not amplified most other types of transporters. Mxa has selectively amplified one family of macrolid exporters relative to Sco (16 versus 1), consistent with the observation that Mxa makes more macrolids than does Sco. Except for electron transport carriers, there is a poor correlation between the types of transporters found in these two organisms, suggesting that their solutions to differentiative and metabolic needs evolved independently. A number of unexpected and surprising observations are presented, and predictions are made regarding the physiological functions of recognizable transporters as well as the existence of yet to be discovered transport systems in these two important model organisms and their relatives. The results provide insight into the evolutionary processes by which two dissimilar prokaryotes evolved complexity, particularly through selective chromosomal gene amplification.

B. Lapizco-Encinas, B. Simmons, E. Cummings et al.

Analytical Chemistry • 2004

Insulator-based (electrodeless) dielectrophoresis (iDEP) is an innovative approach in which the nonuniform electric field needed to drive DEP is produced by insulators, avoiding problems associated with the use of electrodes. Live and dead Escherichia coli were concentrated and selectively released by applying stepped DC voltages across a microchannel containing an array of insulating posts etched in glass. The only electrodes present were two platinum wires placed in the inlet and outlet reservoirs, producing mean electric fields of up to 200 V/mm across the insulators. The cells were labeled with Syto 9 and propidium iodide and imaged through a fluorescent microscope. Cell trapping and release were controlled by modifying the relative responses of electrokinesis and DEP by adjusting the magnitude of the applied voltage. Dead cells were observed to have significantly lower dielectrophoretic mobility than live cells, whereas the electrokinetic mobilities of live and dead cells were indistinguishable. The locations of the bands of differentially trapped cells were consistent with predictions. In addition, cells were selectively trapped and concentrated against backgrounds of 1- and 0.2-microm carboxylate-modified polystyrene particles. This first application of iDEP for simultaneous live/dead bacteria separation and concentration illustrates its potential as a front-end method for bacterial analysis.

Xuehua Li, Zhiwei Zhao, C. Pan

Microchimica Acta • 2016

AbstractAn electrochemical approach is introduced for synthesis of carbon dots (CDs) by exfoliating graphite rods at a voltage of 15 V in an electrolyte consisting of a mixture of water and two ionic liquids. It is found that the size of the CDs can be tuned by varying the fraction of water in the mixed electrolyte; CDs in sizes of 4.9, 4.1 and 3.1 nm are obtained if the electrolyte contains water in fractions of 24, 38 and 56 %, respectively. The CDs have a quantum yield of almost 10 % and display the typical excitation wavelength-dependent maxima of photoluminescence, strongest at excitation/emission wavelengths of 360/440 nm. Fourier transform infrared and X-ray photoelectron spectroscopy show the CDs to have oxygen functional groups on their surface which strongly improve solubility. The CDs were applied to image cells of the electricity-producing bacteria Shewanellaoneidensis MR-1. Graphical AbstractAn electrochemical approach is introduced to synthesize carbon dots by exfoliating graphite rods in mixed electrolyte of water and ionic liquids. The increasing size of carbon dots was realized by reducing the volume of water in the mixed electrolyte. The carbon dots were used to fluorescently image the electricity-producing bacterium Shewanellaoneidensis MR-1.

Zhicheng Cai, Jiamei Wang, Chencheng Liu et al.

Foods • 2022

In order to investigate the effects of high voltage atmospheric cold plasma (HVACP) treatment on the number of microorganisms in and the quality of Trachinotus ovatus during refrigerator storage, fresh fish was packaged with gases CO2:O2:N2 (80%:10%:10%) and treated by HVACP at 75 kV for 3 min; then, the samples were stored at 4 ± 1 °C for nine days. The microbial numbers, water content, color value, texture, pH value, thiobarbituric acid reactive substance (TBARS), and total volatile base nitrogen (TVB-N) values of the fish were analyzed during storage. The results showed the growth of the total viable bacteria (TVB), psychrophilic bacteria, Pseudomonas spp., H2S-producing bacteria, yeast, and lactic acid bacteria in the treated samples was limited, and they were 1.11, 1.01, 1.04, 1.13, 0.77, and 0.80 log CFU/g−1 lower than those in the control group after nine days of storage, respectively. The hardness, springiness, and chewiness of the treated fish decreased slowly as the storage time extended, and no significant changes in either pH or water content were found. The lightness (L*) value increased and the yellowness (b*) value decreased after treatment, while no changes in the redness (a*) value were found. The TBARS and TVB-N of the treated samples increased to 0.79 mg/kg and 21.99 mg/100 g, respectively, after nine days of refrigerator storage. In conclusion, HVACP can limit the growth of the main microorganisms in fish samples effectively during nine days of refrigerator storage with no significant negative impact on their quality. Therefore, HVACP is a useful nonthermal technology to extend the refrigerator shelf-life of Trachinotus ovatus.

Priscila A. Rodriguez, Serena Abbondante, M. Marshall et al.

• 2024

Assembly of NADPH oxidase 2 (NOX2) proteins in neutrophils plays an essential role in controlling microbial infections by producing high levels of reactive oxygen species (ROS). We reported that neutrophils and NOX2 are required to control P. aeruginosa in a clinically relevant murine model of blinding corneal infection. Given the published role for the voltage-gated proton channel Hv1 in sustaining NOX2 production, we examined the role of Hv1 in P. aeruginosa keratitis. Hvcn1−/− mice exhibited an impaired ability to kill bacteria that was associated with reduced neutrophil recruitment to infected corneas. Unlike earlier reports, we found that Hvcn1−/− neutrophils produce more rather than less ROS compared with control neutrophils infected with P. aeruginosa or stimulated with PMA or zymosan. Collectively, we demonstrate that Hv1 has an important role in control of bacterial growth by neutrophils in bacterial infection beyond the regulation of ROS production.

M. Trevisani, C. Cevoli, L. Ragni et al.

Frontiers in Microbiology • 2021

Non-thermal atmospheric plasma (NTAP) has gained attention as a decontamination and shelf-life extension technology. In this study its effect on psychrotrophic histamine-producing bacteria (HPB) and histamine formation in fish stored at 0–5°C was evaluated. Mackerel filets were artificially inoculated with Morganella psychrotolerans and Photobacterium phosphoreum and exposed to NTAP to evaluate its effect on their viability and the histidine decarboxylase (HDC) activity in broth cultures and the accumulation of histamine in fish samples, stored on melting ice or at fridge temperature (5°C). NTAP treatment was made under wet conditions for 30 min, using a dielectric barrier discharge (DBD) reactor. The voltage output was characterized by a peak-to-peak value of 13.8 kV (fundamental frequency around 12.7 KHz). This treatment resulted in a significant reduction of the number of M. psychrotolerans and P. phosphoreum (≈3 log cfu/cm2) on skin samples that have been prewashed with surfactant (SDS) or SDS and lactic acid. A marked reduction of their histamine-producing potential was also observed in HDC broth incubated at either 20 or 5°C. Lower accumulation of histamine was observed in NTAP-treated mackerel filets that have been inoculated with M. psychrotolerans or P. phosphoreum and pre-washed with either normal saline or SDS solution (0.05% w/v) and stored at 5°C for 10 days. Mean histamine level in treated and control groups for the samples inoculated with either M. psychrotolerans or P. phosphoreum (≈5 log cfu/g) varied from 7 to 32 and from 49 to 66 μg/g, respectively. No synergistic effect of SDS was observed in the challenge test on meat samples. Any detectable amount of histamine was produced in the meat samples held at melting ice temperature (0–2°C) for 7 days. The effects of NTAP on the quality properties of mackerel’s filets were negligible, whereas its effect on the psychrotrophic HPB might be useful when time and environmental conditions are challenging for the cool-keeping capacity throughout the transport/storage period.

S. Kumari, N. Mangwani, Surajit Das

• 2015

Biofilm-forming marine bacterial isolates Paenibacillus lautus NE3B01, Pseudomonas mendocina NR802, Stenotrophomonas acidaminiphila NCW702 and Pseudomonas pseudoalcaligenes NP103 in microbial fuel cell (MFC) were investigated for low-voltage power generation. Biofilm formation by the isolates was evaluated by glass tube assay, microtitre plate assay and fluorescence microscopy. A dual chamber MFC of 2 litre capacity was constructed for low-voltage power generation and current output. Two chambers were internally connected by salt bridge and externally the circuit was connected with copper wires which were joined to the electrodes at the two ends and to the multimeter. Maximum current was generated when the salt bridge was constructed using 1 M KCl for all the four bacterial isolates. With Paenibacillus lautus NE3B01, a maximum voltage of 727.5 ± 13.4 mV in 6 h with 7 g/l of glucose as the sole source of carbon was recorded. However, Pseudomonas mendocina NR802 MFC was the most stable in terms of potential generation among all the isolates used for MFC studies. The experimental data for current and voltage showed that the biofilm-forming marine bacterial isolates are useful in MFC technology.

Chandran Masi, Getachew Gemechu, Mesfin Tafesse

• 0

<title>Abstract</title> <p>BackgroundA wide variety of Bacterial species produces protease enzyme and the application of same enzyme have been manipulated precisely and used in various biotechnological areas including industrial and environmental sectors. The main aim of this research study was to isolate, screen and identify protease producing bacteria which were sampled from leather industry effluent present in the outer skirts of Addis Ababa, Ethiopia.PurposeTo isolated alkaline protease producing bacteria from leather industrial effluents and to characterization (Secreening and identification).MethodsSample collected from Modji leather industrial effluents and stored in the microbiology lab. After isolated bacteria from effluent using serial dilution and followed by isolate protease producing bacteria using skim milk agar media. After studying Primary and secondary screening using zonal inhibition methods to select potential protease producing bacteria using skim milk agar media. Finally to characterization and identification of potential bacteria using biochemical methods, protein estimation, biomass, protease assay and gene sequencing (16S rRNA) method to finalized best protease producing bacteria. ResultsTwenty-eight different bacterial colonies were isolated initially from the leather industry effluent sample situated at Modjo town of Ethiopia. The isolated bacteria were screened using primary screening method with skim milk agar medium. Three isolates namely MS12, ML5 and ML12 showing highest zone of proteolysis as a result of casein degradation on the agar plates were selected and subjected to secondary screening. Further secondary secreening confirmed that MS12, ML5 and ML12 has efficient proteolytic activity and can be considered as potent protease producer. The three isolates were then subjected to morphological and biochemical tests to identify probably bacterial species and all the three bacterial isolates were found out to be of Bacillus species. Shake flask method was carried out to identify the most potent one having greater biomass production capabilities, protein quantity and protease activity. ML12 isolated from leather effluent waste showed highest Protein(170mg/ml), Protease activity(19U/ml), high biomass production and the same was subjected to molecular identification using 16s sequencing and a Phylogenetic tree was constructed to identify the closest neighbor. The isolate ML12 is 97.87% homologous to Bacillus cereus strain (KY995152.1) and 97.86% homologous to Bacillus cereus strain (MK968813.1).ConclusionsThis study has revealed that the leather industry effluent site has significant feature of housing potent bacterial species producing protease of commercial value. Being one among the most widely used enzyme, comparatively. Protease holds a larger scope for research and commercialization any other type of enzymes. There is a need to develop novel protease enzymes for further necessary applications of these enzymes. Moreover, enzyme produced by bacteria which are present in effluents are a greater boon to establish the significance of converting industrial wastes to a highly valuable enzymes especially like proteases.</p>

M. Ghirardi, Sergey N Kosourov, P. Maness et al.

Encyclopedia of Industrial Biotechnology • 2010

The reduction of carbon dioxide emissions that are responsible for global climate change is currently the major scientific challenge facing the world. Harvesting solar energy via photosynthesis and converting it directly into fuel is a natural means of producing clean, renewable energy. Oxygenic photosynthetic microbes, such as green algae, are capable of simultaneously splitting water and generating oxygen and hydrogen. The harnessed energy, in the form of hydrogen gas, can then be directly coupled to a fuel cell for electricity generation, or used as a feedstock for the synthesis of more complex carbon fuels. At the moment, the efficiency of hydrogen photoproduction from green algae is very low. This article summarizes the biochemical pathway for hydrogen production from algae and the challenges that must be overcome to raise the conversion efficiency to a level that will support a commercial process.

Zixiang Xu, Jing Guo, Yunxia Yue et al.

Journal of Biological Systems • 2018

Microbial Fuel Cells (MFCs) are devices that generate electricity directly from organic compounds with microbes (electricigens) serving as anodic catalysts. As a novel environment-friendly energy source, MFCs have extensive practical value. Since the biological features and metabolic mechanism of electricigens have a great effect on the electricity production of MFCs, it is a big deal to screen strains with high electricity productivity for improving the power output of MFC. Reconstructions and simulations of metabolic networks are of significant help in studying the metabolism of microorganisms so as to guide gene engineering and metabolic engineering to improve their power-generating efficiency. Herein, we reconstructed a genome-scale constraint-based metabolic network model of Shewanella loihica PV-4, an important electricigen, based on its genomic functional annotations, reaction databases and published metabolic network models of seven microorganisms. The resulting network model iGX790 consists of 902 reactions (including 71 exchange reactions), 798 metabolites and 790 genes, covering the main pathways such as carbon metabolism, energy metabolism, amino acid metabolism, nucleic acid metabolism and lipid metabolism. Using the model, we simulated the growth rate, the maximal synthetic rate of ATP, the flux variability analysis of metabolic network, gene deletion and so on to examine the metabolism of S. loihica PV-4.